galaxyproject / galaxyproject/galaxy

The future of the phylogenetic tools?

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Description

During our latest workshop I got the quesiton if we can make this [add_scores](https://github.com/galaxyproject/galaxy/blob/dev/tools/evolution/add_scores.xml) compatible with HG38.

This raises a general question, do we want to support these tools here, do they need to be migrated?
And why is this included? https://github.com/galaxyproject/galaxy/blob/dev/tools/evolution/add_scores.xml#L37

Contributor guide

Open the contributing guide

Research direction

Start by reading tools/evolution/add_scores.xml, especially the referenced section around line 37, and compare its current behavior with the HG38 compatibility question. The issue does not define a concrete implementation or acceptance criteria; progress would require deciding whether these phylogenetic tools should be supported or migrated.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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