galaxyproject / galaxyproject/galaxy

Job submission Failure" popup when the use of MetadataElement in biom1 datatype

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#2,137 2 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
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Description

Hi,
we developed tools that generate biom1 output file. But since the use of MetadataElement in the biom class in text.py (#1198 , commit b5c77a8e8c0255f61ca62a7ff2311d443e224bec ) , when executing a job, a "Job submission Failure" pop up appear even if the job is running successfully (after refresh the history). I am searching from where it may come but if you have some ideas, I would be very interested in?

regards

Maria

Contributor guide

Open the contributing guide

Research direction

Start by reviewing the MetadataElement change in text.py referenced by commit b5c77a8e8c0255f61ca62a7ff2311d443e224bec, then trace the job submission path for tools producing biom1 output. Reproduce the issue with a generated biom1 file and confirm that a successfully running job no longer shows a “Job submission Failure” popup.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
backend
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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