galaxyproject / galaxyproject/foundry

Research Nextflow process to Galaxy tool wrapper mapping

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priority/mvp roadmap/main
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TypeScript
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Description

## Summary
Write a research note mapping Nextflow process evidence to Galaxy tool wrapper fields.

## Molds that will link it
- `author-galaxy-tool-wrapper`
- `summarize-galaxy-tool`
- `implement-galaxy-tool-step`

## Questions
- How do process inputs/outputs become Galaxy tool params/data outputs?
- How should shell scripts, aliases, publishDir, and optional outputs be represented?
- How should multi-tool processes be handled?

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