galaxyproject / galaxyproject/brc-analytics

add hgPhyloPlace newick files to data catalog

Open
#529 3 comments 0 reactions 1 assignee Claimed by @d-callan View on GitHub
Dominant language
TypeScript
Stars
7
Forks
11
Avg merge
2d 12h
Merged PRs (30d)
16

Description

we have urls like the following:

https://hgdownload.gi.ucsc.edu/hubs/GCF/000/857/045/GCF_000857045.1/UShER_MPXV_cladeI/

where we can grab down newick trees and associated metadata. the urls are associated w outbreaks and not quite predictable, so they need manually defined. also, some outbreaks will have multiple such urls, which may need to be associated w specific taxa worth highlighting within the outbreak tab and others will have none.

so the goal is to update outbreaks yaml w these urls, and the build script to pull down the newick and maybe metadata files and make them meaningfully available as outputs of the data catalog that the app can consume.

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.