galaxyproject / galaxyproject/brc-analytics
Comparative analysis flow
- Dominant language
- TypeScript
- Stars
- 7
- Forks
- 11
- Avg merge
- 2d 12h
- Merged PRs (30d)
- 16
Description

## Initial specs for comparative analysis
Initially we will only allow pairwise comparisons. So only two genomes can be selected at a time. The flow is like this:
A user does this:
1). Choose two genome assemblies
2). Click "compare"
3). This get you to a Galaxy workflow for pairwise comparison https://vgp.usegalaxy.org/u/cartman/w/imported-align-chain-and-net
4). Get resulting MAF
5). Display MAF at UCSC
6). Process MAF using UCSC MAFTools
------
To do:
1). Ensure that results of workflow comply with UCSC data (e.g., can we replicate UCSC data https://github.com/galaxyproject/alignment-pipeline/issues/1)
2). Wrap all UCSC MAF Tools
3). Refine https://github.com/galaxyproject/kc-align
Contributor guide
No contributing guide indexed for this repository
Assessment
This issue has not been assessed yet.