galaxyproject / galaxyproject/brc-analytics

Comparative analysis flow

Open
#358 0 comments 0 reactions 3 assignees Claimed by @nekrut View on GitHub
Dominant language
TypeScript
Stars
7
Forks
11
Avg merge
2d 12h
Merged PRs (30d)
16

Description

![Image](https://github.com/user-attachments/assets/12a0fc04-da5e-4982-b200-b4fc7139466b)

## Initial specs for comparative analysis

Initially we will only allow pairwise comparisons. So only two genomes can be selected at a time. The flow is like this:

A user does this:

1). Choose two genome assemblies
2). Click "compare"
3). This get you to a Galaxy workflow for pairwise comparison https://vgp.usegalaxy.org/u/cartman/w/imported-align-chain-and-net
4). Get resulting MAF
5). Display MAF at UCSC
6). Process MAF using UCSC MAFTools

------

To do:

1). Ensure that results of workflow comply with UCSC data (e.g., can we replicate UCSC data https://github.com/galaxyproject/alignment-pipeline/issues/1)
2). Wrap all UCSC MAF Tools
3). Refine https://github.com/galaxyproject/kc-align

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.