galaxyproject / galaxyproject/brc-analytics
Mirror prioritized selected track data from VEuPathDB at UCSC (JBrowse2 tracks deconvolution)
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- Dominant language
- TypeScript
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- Avg merge
- 2d 12h
- Merged PRs (30d)
- 16
Description
- VEuPathDB had JBrowse instances set up so that each config and tracks are done dynamically (not typical); REST service sits in front of database to write config files and extract data dynamically to display in JBrowse
- For sequence and genes, .gff and .fasta; not accessed
- There are many many tracks for plasmodium genome
- PlasmoDB flat files are massive
- Can see github repo where we could extract information from other data tracks and database features, can reverse engineer from here
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