galaxyproject / galaxyproject/brc-analytics

support intersection in primary contrasts

Open
#1,102 1 comment 1 reaction 1 assignee Claimed by @NoopDog View on GitHub
Dominant language
TypeScript
Stars
7
Forks
11
Avg merge
2d 12h
Merged PRs (30d)
16

Description

so when i saw where we landed w the de stepper ui, i realized we could fairly easily expand to support intersections w * in deseq design formulas.. wed have to make the primary contrasts choice support multiple sections, so radio -> checkboxes. then the design formula would iirc become something like:

~ covariate + primary1 * primary2

probably important to tell ppl when to use it, something like:

Interactions test whether the effect of one variable depends on another.
Use interactions only when you expect different biological effects across groups and have samples for all combinations of factors.

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.