Transitive dependencies from generate-include-scripts fail to load in Fsi

Description

In Linux (using Mono 4.6.1.5) the resolution behavior doesn't take into account transitive assemblies of any include script generated by Paket in your main script. Transitive dependencies from I can see are affected by the issue and FSI fails to evaluate/load the transitive assembly.

Repro steps

Please provide the steps required to reproduce the problem

1. paket generate-include-scripts to generate the F# scripts.
2. Reference the appropriate include script.
3. Try using a type from an generated include script that has transitive dependencies on another Nuget package. (e.g a type inported from something like #load "include.main.fsx").

Expected behavior

F# script to just work with the correct dependencies.

Actual behavior

/path/to/current/dir/stdin(0,1): error FS0078: Unable to find the file 'TransitiveDep.dll' in any of
/usr/lib/mono/4.5

Known workarounds

For every assembly load (#r) generated by Paket do it instead via two steps (e.g if assembly is ./paket-files/net46/Newtonsoft.Json.dll):

• Using the #I to register the directory ( #I /paket-files/net46/)
• Loading the #r with or without the directory. (#r Newtonsoft.Json.dll)

If all assembly loads on all generated scripts are done this way it all works as expected.

Believe this is related to: https://github.com/fsharp/fsharp/issues/251.

Start by reproducing the failure with paket generate-include-scripts on Linux under Mono 4.6.1.5, then reference a generated include script with a transitive dependency. Compare the generated #r loads with the documented #I workaround; done means Fsi loads the transitive assembly and evaluates the script without FS0078.