flatironinstitute / flatironinstitute/DeepFRI
map GO to other ontologies
- Dominant language
- Python
- Stars
- 356
- Forks
- 89
- PR merge metrics
- No merged PRs in 30d
Description
GO is our gold standard (and for a good reason) but many people and application also provide different ontologies. it would be neat to have a mapping between GO and other ontologies as a post-processing step.
for example (from eggNOG):
- [ ] EC
- [ ] KEGG_ko
- [ ] KEGG_Pathway
- [ ] KEGG_Module
- [ ] KEGG_Reaction
- [ ] KEGG_rclass
- [ ] BRITE KEGG_TC
- [ ] CAZy
- [ ] BiGG_Reaction
Contributor guide
No contributing guide indexed for this repository
Research direction
The issue does not name files, tests, or entry points. First identify the post-processing workflow and decide how mappings for EC, KEGG, BRITE, CAZy, and BiGG should be sourced and represented; done means documented mappings are produced for the listed ontology targets.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100