flatironinstitute / flatironinstitute/DeepFRI

PDB files prediction

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Dominant language
Python
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Forks
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Description

Hello,
I have a problem about the prediction with some PDB files. You say python predict.py --pdb_dir ./examples/pdb_files -ont mf --saliency --use_backprop. But in your pridict.py, the args don't have this arg "use_backpop". How can I deal with it !

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Research direction

Start by comparing the documented command `python predict.py --pdb_dir ./examples/pdb_files -ont mf --saliency --use_backprop` with the arguments accepted by `predict.py`. Determine whether the command or the argument handling is incorrect, then verify that PDB prediction and the saliency option work as documented.

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Assessment

Tech stack
python
Domain
bioinformatics, cli, machine-learning
Issue type
Bug
Difficulty
2/5
Estimated time
1-3 hours
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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