Snpsift tool references in the documentation
- Dominant language
- Java
- Stars
- 8
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
**Background**
In the original Fonda documentation, the `snpsift` tool is stated in the toolset as an annotation tool. However, Fonda code does not check the tool is specified anywhere and performs `snpsift` annotation in the `vcf_snpeff_annotation.py` file. Perhaps it was originally envisaged for the other, but it was not implemented? If not, in order not to mislead the user, we suggest removing such examples in the documentation.
**Approach**
Remove `snpsift` tool references in the Fonda documentation.
Contributor guide
Research direction
Search the Fonda documentation for `snpsift` references; the issue does not name specific documentation files. Remove the references described in the approach, then review the documentation to confirm that misleading `snpsift` examples no longer remain.
Written by the indexing model from the issue text.
Assessment
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100