epam / epam/Indigo

Tune decision tree for Lee-Crippen SMARTS pKa calculation method

Open
#822 0 comments 0 reactions 1 assignee Assigned to @even1024 View on GitHub
Core Improvement Test Cases Written
Dominant language
C++
Stars
406
Forks
134
Avg merge
2d 11h
Merged PRs (30d)
24

Description

We have freshly implemented Lee-Crippen SMARTS pKa calculation method. Using new datasets from various sources we need to adjust the decision SMARTS-tree, which is an essential part of this method, to produce good pKa values for various compound with different structure.

At the beginning the following datasets can be used:
[Machine learning meets pKa](https://github.com/czodrowskilab/Machine-learning-meets-pKa/tree/master/datasets
)
[DataWarrior pKa in water](https://github.com/TVect/mol_property/blob/master/mol_property/pka/train/data/pKaInWater.csv)
[IUPAC dataset](https://github.com/IUPAC/Dissociation-Constants)

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.