epam / epam/Indigo

Problems with the placement of phosphate groups and bond lengths arise when using the "Arrange as a Ring" action.

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cyclic layout Priority: Medium
Dominant language
C++
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2d 11h
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Description

**Steps to Reproduce**
1. Open Macromolecules
2 Snake Mode > Open HELM file [ketcher(4RINGs).zip](https://github.com/user-attachments/files/26830816/ketcher.4RINGs.zip)
3. Select FLEX mode
4. Select part of structure as bellow

Image

5. Select Arrange as a Ring > Phashate angles are Ok, but the bond length is too much for the phopshates

Image

6. Press UNDO
7. Select part of structure as bellow

Image

8. Select Arrange as a Ring > Phashates inside.

Image

**Actual behavior**
Problems with the placement of phosphate groups and bond lengths arise when using the "Arrange as Ring" action.
see Step 5. Phashate angles are Ok, but the bond length is too much for the phopshates
see Step 8 Phashates inside.

**Expected behavior**
see Step 5. the bond length should be standard (or

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