Atoms are mapped incorrectly after using Auto-Mapping Tool
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- C++
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Description
**Steps to reproduce:**
### Scenario#1
1. Open the attached file "3.rxn". [3.zip](https://github.com/epam/Indigo/files/5753846/3.zip)
2. Select the Reaction Auto-Mapping Tool.
3. In the 'Reaction Auto-Mapping' dialog click 'OK' button ('Discard' item is selected).
**Actual result:**
Not all atoms are mapped in the reaction.
**Expected result:**
All possible reactant and product atoms are mapped in the reaction.
### Scenario#2
1. Open the attached file real_reaction.rxn. [real_reaction.zip](https://github.com/epam/Indigo/files/5753963/real_reaction.zip)
2. Select the Reaction Auto-Mapping Tool.
3. In the 'Reaction Auto-Mapping' dialog click 'OK' button ('Discard' item is selected).
**Actual result:**
Auto-mapping for reactant and product atoms is incorrect.
**Expected result:**
Auto-mapping for reactant and product atoms is correct.
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