UI issues with displaying of chemical elements with abbreviation after loading from RDF

**Steps to Reproduce**
1. Add to Canvas RDF with reaction based on elements with abbreviation
[!rdf-abbreviation-issues.zip](https://github.com/user-attachments/files/17059433/rdf-abbreviation-issues.zip)

**Actual Result**
- Reaction is added to Canvas, but there are multiple issues:
- 1 - element is very close to tail
- 2 - element is displayed above the tail
- 3 - text of element is intersected with spine of Multi-Tailed Arrow
- 4 - element is displayed above the head
- 5 - text of element is intersected with the another element

**Expected Result**
- Should be confirmed with @vanoprenko and @AlexanderSavelyev (TBD):
- 1 - make an indent?
- 2 - should be displayed near the tail
- 3 - make an indent?
- 4 - should be displayed near the head
- 5 - make an indent?

**Environment details**
- Tested on CI CD master SA environment
- Ketcher [Version 2.25.0-rc.1] Build at 2024-09-18; 05:59:24
- Indigo Version 1.25.0-dev.1.38-gdbf49deb-wasm32-wasm-clang-12.0.0
- Windows 11 Enterprise
- Chrome Version 128.0.6613.138 (Official Build) (64-bit)

**Notes**
- Issue is detected during exploratory testing of Load RDF feature for cascade reactions - https://github.com/epam/Indigo/issues/2102