elixir-europe / elixir-europe/rdmkit

FAIR data management of systems biology models

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#1,709 6 comments 1 reaction 1 assignee Claimed by @wittigue View on GitHub
new page request
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Python
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Merged PRs (30d)
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Description

**What topic do you wish to add?**
Please provide a brief description.

A page on recommendations and actions to take for data management and FAIRification of systems biology models.

**Are there existing pages in the RDMkit website related to the requested page?**

The section [Design: mathematical model - standards and (meta)data publication
](https://rdmkit.elixir-europe.org/microbial_biotechnology#design-mathematical-model---standards-and-metadata-publication) in the page [Microbial biotechnology](https://rdmkit.elixir-europe.org/microbial_biotechnology#design-mathematical-model---standards-and-metadata-publication) contains a limited amount of relevant information specific to microbial biotechnology.

**Resources**
If there are there resources that could be utilised for writing the new page, please list them below:

* _Page will be based on a community manuscript currently in preparation_
* [[2502.15597] From FAIR to CURE: Guidelines for Computational Models of Biological Systems](https://arxiv.org/abs/2502.15597)
* [Minimum information required in the annotation of models - Wikipedia](https://en.wikipedia.org/wiki/Minimum_information_required_in_the_annotation_of_models)
* [FAIRification of computational models in biology | bioRxiv](https://www.biorxiv.org/content/10.1101/2025.03.21.644517v1.full)
* [standard-GEM: standardization of open-source genome-scale metabolic models | bioRxiv](https://www.biorxiv.org/content/10.1101/2023.03.21.512712v1.full)
* [Making PBPK models more reproducible in practice](https://doi.org/10.1093/bib/bbae569)
* [Challenges and opportunities for system biology standards and tools in medical research](http://ceur-ws.org/Vol-1692/paperC.pdf)
* [FAIR COMBINE Archive Indicators](https://fair-ca-indicators.github.io/)

**Context**
If this request is coming from a particular project, domain, or use-case please list them below:

[ELIXIR Systems Biology Community](https://elixir-europe.org/communities/systems-biology)

Contributor guide

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