ebi-ait / ebi-ait/microbe-central
Check Metadata Fields in BioSamples
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Description
Two tasks here:
Correct existing metadata in BioSamples
Search for samples with similar issues in BioSamples
- [ ] '[broadleaf forest biome](https://www.google.com/url?q=https://www.ebi.ac.uk/biosamples/samples?text%3D%26filter%3Dattr%253Abroad-scale%2Benvironmental%2Bcontext%253Abroadleaf%2Bforest%2Bbiome&sa=D&source=docs&ust=1736874030090424&usg=AOvVaw2P0O0BFUMCdQapIYyC5oAQ)' as a 'local environment context' in Microbe samples - this is not right according to Tanja. Figure out the correct ontology term to put here.
- [x] Collection date showing 2023-05-72
- [x] [SAMEA115410272](https://www.ebi.ac.uk/biosamples/samples/SAMEA115410272) has 'preservation temperature' of 4C but 'freezing method' of Ultra Low Temperature Freezer.
- [x] [SAMEA115408689](https://www.ebi.ac.uk/biosamples/samples/SAMEA115408689) has duplicated values in each of freezing/preservation method and freezing/preservation temperature. (Low priority as this comes from some freezing methods and preservation methods being identical)
- [x] Some samples have "timepoint" instead of "time point"
Contributor guide
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Research direction
Start with the unchecked BioSamples query for “broadleaf forest biome” and compare its value with the relevant ontology terms; the issue names no repository files or tests. Review similar Microbe samples for the same metadata problem. Done means the incorrect term is replaced with the agreed ontology term and comparable issues are identified.
Written by the indexing model from the issue text.
Assessment
- Domain
- databases
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100