eastgenomics / eastgenomics/eggd_purple_plotter

Update QC metrics shown at top of the page

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Dominant language
Python
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Description

Currently the top of the page looks like
Image

Add inputs to the app to take the purity and ploidy that's output by purple and display these.
Remove the "QC_FLAG", MSI and TMB

"CNV viewer (bars)" makes no sense - change this to something like Purple plotter or SV viewer

Contributor guide

No contributing guide indexed for this repository

Research direction

No file or test is named in the issue. Start by locating the page entry point that renders the top QC metrics and the app inputs, then trace how PURPLE outputs are passed into the view. Done means purity and ploidy are displayed, QC_FLAG, MSI, and TMB are removed, and “CNV viewer (bars)” has a clearer name such as “Purple plotter” or “SV viewer”.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
frontend
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
64/100

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