eastgenomics / eastgenomics/eggd_nirvana
Update Nirvana
Open
bug
enhancement
- Dominant language
- Shell
- Stars
- 0
- Forks
- 0
- PR merge metrics
- No merged PRs in 30d
Description
This version (2.0.3) of Nirvana is outdated, and contains known bugs including incorrect HGVS annotation of variants downstream of differences between the reference genome and the transcript sequence.
Need to update to current version.
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by locating where Nirvana 2.0.3 is pinned or invoked in this repository. Confirm the current Nirvana version and determine how the existing wrapper or workflow is tested; done means the repository uses the current version and the known annotation issue is addressed.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- shell
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100