SE analysis not working properly
Open
Nobody has claimed this yet.
- Dominant language
- Shell
- Stars
- 22
- Forks
- 10
- PR merge metrics
- No merged PRs in 30d
Description
Sample names are truncated in the single-end pipeline due to an underscore character
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the single-end pipeline with a sample name containing an underscore, then trace where sample names are parsed or truncated. Done means the full sample name is preserved throughout single-end analysis; no file or test is named in the issue, so add focused coverage if the repository provides a testing path.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- shell
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100