docker / docker/cli

docker-ce 29.0.0 with nested overlayfs storage driver seems not support whiteout (deleting file on lower layer) in improper dind setup

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#6,646 15 comments 2 reactions 0 assignees View on GitHub

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kind/bug status/0-triage version/29.0
Dominant language
Go
Stars
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Forks
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Avg merge
1d 15h
Merged PRs (30d)
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Description

Description

In docker-ce_29.0.0-1~debian.11~bullseye_amd64.deb, Cannot build or load a image with following Dockerfile:

FROM alpine
RUN rm /etc/hostname

the problem is: docker-ce 29.0.0-1 cannot delete files in lower layer.

Reproduce

Run following commands in docker run --rm -it --privileged debian:bullseye (docker in docker setup)

  1. apt-get update && apt-get install -y ca-certificates curl
  2. install -m 0755 -d /etc/apt/keyrings
  3. curl -fsSL https://download.docker.com/linux/debian/gpg -o /etc/apt/keyrings/docker.asc
  4. chmod a+r /etc/apt/keyrings/docker.asc
  5. tee /etc/apt/sources.list.d/docker.sources <<EOF
    Types: deb
    URIs: https://download.docker.com/linux/debian
    Suites: bullseye
    Components: stable
    Signed-By: /etc/apt/keyrings/docker.asc
    EOF
  6. apt-get update
  7. curl -O https://download.docker.com/linux/debian/dists/bullseye/pool/stable/amd64/docker-ce_29.0.0-1~debian.11~bullseye_amd64.deb
  8. apt-get install -y docker-ce_29.0.0-1~debian.11~bullseye_amd64.deb
  9. dockerd &
  10. mkdir whiteout && cd whiteout
  11. (echo "FROM alpine"; echo "RUN rm /etc/hostname") | tee Dockerfile
  12. docker build .

result:

[+] Building 0.9s (5/5)                                                                                                                                                                              docker:default
 => [internal] load build definition from Dockerfile                                                                                                                                                           0.0s
 => => transferring dockerfile: 70B                                                                                                                                                                            0.0s
 => [internal] load metadata for docker.io/library/alpine:latest                                                                                                                                               0.8s
[+] Building 1.0s (5/5) FINISHED                                                                                                                                                                     docker:default
 => [internal] load build definition from Dockerfile                                                                                                                                                           0.0s
 => => transferring dockerfile: 70B                                                                                                                                                                            0.0s
 => [internal] load metadata for docker.io/library/alpine:latest                                                                                                                                               0.8s
 => [internal] load .dockerignore                                                                                                                                                                              0.0s
 => => transferring context: 2B                                                                                                                                                                                0.0sv
 => CACHED [1/2] FROM docker.io/library/alpine:latest@sha256:4b7ce07002c69e8f3d704a9c5d6fd3053be500b7f1c69fc0d80990c2ad8dd412                                                                                  0.0sy
 => => resolve docker.io/library/alpine:latest@sha256:4b7ce07002c69e8f3d704a9c5d6fd3053be500b7f1c69fc0d80990c2ad8dd412                                                                                         0.0sf
 => ERROR [2/2] RUN rm /etc/hostname                                                                                                                                                                           0.1s
------
 > [2/2] RUN rm /etc/hostname:
------
Dockerfile:2
--------------------
   1 |     FROM alpine
   2 | >>> RUN rm /etc/hostname
   3 |     
--------------------
ERROR: failed to build: failed to solve: process "/bin/sh -c rm /etc/hostname" did not complete successfully: mount source: "overlay", target: "/var/lib/docker/buildkit/containerd-overlayfs/cachemounts/buildkit4108886608", fstype: overlay, flags: 0, data: "workdir=/var/lib/docker/containerd/daemon/io.containerd.snapshotter.v1.overlayfs/snapshots/7/work,upperdir=/var/lib/docker/containerd/daemon/io.containerd.snapshotter.v1.overlayfs/snapshots/7/fs,lowerdir=/var/lib/docker/containerd/daemon/io.containerd.snapshotter.v1.overlayfs/snapshots/5/fs,index=off,redirect_dir=off", err: invalid argument
Expected behavior

Can build the image with 28.5.2-1~debian.11~bullseye

[+] Building 3.3s (7/7) FINISHED                                                                                                                                                                     docker:default
 => [internal] load build definition from Dockerfile                                                                                                                                                           0.0s
 => => transferring dockerfile: 70B                                                                                                                                                                            0.0s
 => [internal] load metadata for docker.io/library/alpine:latest                                                                                                                                               2.2s
 => [auth] library/alpine:pull token for registry-1.docker.io                                                                                                                                                  0.0s
 => [internal] load .dockerignore                                                                                                                                                                              0.0s
 => => transferring context: 2B                                                                                                                                                                                0.0s
 => [1/2] FROM docker.io/library/alpine:latest@sha256:4b7ce07002c69e8f3d704a9c5d6fd3053be500b7f1c69fc0d80990c2ad8dd412                                                                                         0.5s
 => => resolve docker.io/library/alpine:latest@sha256:4b7ce07002c69e8f3d704a9c5d6fd3053be500b7f1c69fc0d80990c2ad8dd412                                                                                         0.0s
 => => sha256:4b7ce07002c69e8f3d704a9c5d6fd3053be500b7f1c69fc0d80990c2ad8dd412 9.22kB / 9.22kB                                                                                                                 0.0s
 => => sha256:85f2b723e106c34644cd5851d7e81ee87da98ac54672b29947c052a45d31dc2f 1.02kB / 1.02kB                                                                                                                 0.0s
 => => sha256:706db57fb2063f39f69632c5b5c9c439633fda35110e65587c5d85553fd1cc38 581B / 581B                                                                                                                     0.0s
 => => sha256:2d35ebdb57d9971fea0cac1582aa78935adf8058b2cc32db163c98822e5dfa1b 3.80MB / 3.80MB                                                                                                                 0.3s
 => => extracting sha256:2d35ebdb57d9971fea0cac1582aa78935adf8058b2cc32db163c98822e5dfa1b                                                                                                                      0.1s
 => [2/2] RUN rm /etc/hostname                                                                                                                                                                                 0.2s
 => exporting to image                                                                                                                                                                                         0.2s
 => => exporting layers                                                                                                                                                                                        0.1s
 => => writing image sha256:321c98552e5e5038b745530ffb8dd25ab3e297d59fabca4956520a7a9967aee8                                                                                                                   0.0s
 => => naming to docker.io/library/whiteout  
docker version
Client: Docker Engine - Community
 Version:           29.0.0
 API version:       1.52
 Go version:        go1.25.4
 Git commit:        3d4129b
 Built:             Mon Nov 10 21:47:13 2025
 OS/Arch:           linux/amd64
 Context:           default

Server: Docker Engine - Community
 Engine:
  Version:          29.0.0
  API version:      1.52 (minimum version 1.44)
  Go version:       go1.25.4
  Git commit:       d105562
  Built:            Mon Nov 10 21:47:13 2025
  OS/Arch:          linux/amd64
  Experimental:     false
 containerd:
  Version:          v2.1.5
  GitCommit:        fcd43222d6b07379a4be9786bda52438f0dd16a1
 runc:
  Version:          1.3.3
  GitCommit:        v1.3.3-0-gd842d771
 docker-init:
  Version:          0.19.0
  GitCommit:        de40ad0
docker info
Client: Docker Engine - Community
 Version:    29.0.0
 Context:    default
 Debug Mode: false
 Plugins:
  buildx: Docker Buildx (Docker Inc.)
    Version:  v0.29.1
    Path:     /usr/libexec/docker/cli-plugins/docker-buildx
  compose: Docker Compose (Docker Inc.)
    Version:  v2.40.3
    Path:     /usr/libexec/docker/cli-plugins/docker-compose

Server:
 Containers: 0
  Running: 0
  Paused: 0
  Stopped: 0
 Images: 0
 Server Version: 29.0.0
 Storage Driver: overlayfs
  driver-type: io.containerd.snapshotter.v1
 Logging Driver: json-file
 Cgroup Driver: cgroupfs
 Cgroup Version: 2
 Plugins:
  Volume: local
  Network: bridge host ipvlan macvlan null overlay
  Log: awslogs fluentd gcplogs gelf journald json-file local splunk syslog
 CDI spec directories:
  /etc/cdi
  /var/run/cdi
 Swarm: inactive
 Runtimes: io.containerd.runc.v2 runc
 Default Runtime: runc
 Init Binary: docker-init
 containerd version: fcd43222d6b07379a4be9786bda52438f0dd16a1
 runc version: v1.3.3-0-gd842d771
 init version: de40ad0
 Security Options:
  seccomp
   Profile: builtin
  cgroupns
 Kernel Version: 6.17.7-arch1-1
 Operating System: Debian GNU/Linux 11 (bullseye)
 OSType: linux
 Architecture: x86_64
 CPUs: 16
 Total Memory: 30.96GiB
 Name: eb09c1a85cc1
 ID: 8cad55b5-9fc1-47e4-97b8-2d7eeec169f8
 Docker Root Dir: /var/lib/docker
 Debug Mode: false
 Experimental: false
 Insecure Registries:
  ::1/128
  127.0.0.0/8
 Live Restore Enabled: false
 Firewall Backend: iptables
Additional Info

No response

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing the failure in the nested Docker-in-Docker setup described in the issue, using the two-line Dockerfile with FROM alpine and RUN rm /etc/hostname. Compare Docker Engine 29.0.0 with 28.5.2 and inspect the overlayfs configuration shown in the error. Done means the image builds successfully with the nested overlayfs setup, or the regression and affected component are identified.

Written by the indexing model from the issue text.

Assessment

Tech stack
debian, docker, linux
Domain
devops, infrastructure
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Quiet
Clarity
Mostly clear
Newbie friendliness
38/100

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