Presence of pyproject.toml prevents lint on save.

## Information

**VIM version**

```
VIM - Vi IMproved 8.0 (2016 Sep 12, compiled Jun 06 2019 17:31:41)
Included patches: 1-1453
```

Ubuntu 18.0.4

## What went wrong

vimrc contains ALE config specifying that python files should be subjected to black and isort on save. This works correctly. When pyproject.toml is added to a project, ALE stops running isort and black on save, flake8 still runs asynchronously as expected. pyproject.toml is only required to specify flake8 config, and therefore made no mention of black or isort. Adding [tool.black] and [tool.isort] (with no config since none is necessary) made no difference.

So:
```
[tool.flake8]
max-line-length = 119
```

and

```
[tool.flake8]
max-line-length = 119

[tool.black]

[tool.isort]
```

both give the same effect.

Deleting pyproject.toml altogether, results in lint on save working as expected.

### :ALEInfo

Current Filetype: python
Available Linters: ['bandit', 'flake8', 'mypy', 'prospector', 'pycodestyle', 'pydocstyle', 'pyflakes', 'pylama', 'pylint', 'pyls', 'pyre', 'vulture']
Enabled Linters: ['flake8', 'pylint']
Suggested Fixers:
'add_blank_lines_for_python_control_statements' - Add blank lines before control statements.
'autopep8' - Fix PEP8 issues with autopep8.
'black' - Fix PEP8 issues with black.
'isort' - Sort Python imports with isort.
'remove_trailing_lines' - Remove all blank lines at the end of a file.
'reorder-python-imports' - Sort Python imports with reorder-python-imports.
'trim_whitespace' - Remove all trailing whitespace characters at the end of every line.
'yapf' - Fix Python files with yapf.
Linter Variables:

let g:ale_python_auto_pipenv = 0
let g:ale_python_black_auto_pipenv = 0
let g:ale_python_black_change_directory = 1
let g:ale_python_black_executable = 'black'
let g:ale_python_black_options = ''
let g:ale_python_black_use_global = 0
let g:ale_python_flake8_auto_pipenv = 0
let g:ale_python_flake8_change_directory = 1
let g:ale_python_flake8_executable = 'flake8'
let g:ale_python_flake8_options = ''
let g:ale_python_flake8_use_global = 0
let g:ale_python_isort_executable = 'isort'
let g:ale_python_isort_options = ''
let g:ale_python_isort_use_global = 0
let g:ale_python_pylint_auto_pipenv = 0
let g:ale_python_pylint_change_directory = 1
let g:ale_python_pylint_executable = 'pylint'
let g:ale_python_pylint_options = ''
let g:ale_python_pylint_use_global = 0
let g:ale_python_pylint_use_msg_id = 0
Global Variables:

let g:ale_cache_executable_check_failures = v:null
let g:ale_change_sign_column_color = 0
let g:ale_command_wrapper = ''
let g:ale_completion_delay = v:null
let g:ale_completion_enabled = 0
let g:ale_completion_max_suggestions = v:null
let g:ale_echo_cursor = 1
let g:ale_echo_msg_error_str = 'Error'
let g:ale_echo_msg_format = '[%linter%] %s [%severity%]'
let g:ale_echo_msg_info_str = 'Info'
let g:ale_echo_msg_warning_str = 'Warning'
let g:ale_enabled = 1
let g:ale_fix_on_save = 1
let g:ale_fixers = {'scss': ['prettier'], 'latex': ['chktex'], 'html': ['prettier'], '*': ['remove_trailing_lines', 'trim_whitespace'], 'javascript': ['eslint'], 'htmldjango': ['prettier'], 'rust': ['rustfmt'], 'python': ['isort', 'black']}
let g:ale_history_enabled = 1
let g:ale_history_log_output = 1
let g:ale_keep_list_window_open = 0
let g:ale_lint_delay = 200
let g:ale_lint_on_enter = 1
let g:ale_lint_on_filetype_changed = 1
let g:ale_lint_on_insert_leave = 1
let g:ale_lint_on_save = 1
let g:ale_lint_on_text_changed = 'normal'
let g:ale_linter_aliases = {}
let g:ale_linters = {'vim': ['vint'], 'tex': ['chktex', 'vale'], 'latex': ['chktex'], 'rust': ['rls'], 'javascript': ['eslint', 'prettier'], 'htmldjango': ['prettier'], 'text': ['vale'], 'python': ['flake8', 'pylint']}
let g:ale_linters_explicit = 0
let g:ale_list_vertical = 0
let g:ale_list_window_size = 10
let g:ale_loclist_msg_format = '[%linter%] %s [%severity%]'
let g:ale_lsp_root = {}
let g:ale_max_buffer_history_size = 20
let g:ale_max_signs = -1
let g:ale_maximum_file_size = v:null
let g:ale_open_list = 0
let g:ale_pattern_options = v:null
let g:ale_pattern_options_enabled = v:null
let g:ale_set_balloons = 1
let g:ale_set_highlights = 1
let g:ale_set_loclist = 1
let g:ale_set_quickfix = 0
let g:ale_set_signs = 1
let g:ale_sign_column_always = 0
let g:ale_sign_error = '✖'
let g:ale_sign_info = '⚠'
let g:ale_sign_offset = 1000000
let g:ale_sign_style_error = '✖'
let g:ale_sign_style_warning = '⚠'
let g:ale_sign_warning = '⚠'
let g:ale_sign_highlight_linenrs = 0
let g:ale_statusline_format = v:null
let g:ale_type_map = {}
let g:ale_use_global_executables = v:null
let g:ale_virtualtext_cursor = 0
let g:ale_warn_about_trailing_blank_lines = 1
let g:ale_warn_about_trailing_whitespace = 1
Command History: