Refactor the scripts to call from configuration settings within different modules
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organizational cleanup
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Description
[https://github.com/nugraph/nugraph/blob/9ffb6ccac82fbbab7c2cfe130df017a3b518d176/nugraph/models/nugraph3/NuGraph3.py#L260](https://github.com/nugraph/nugraph/blob/9ffb6ccac82fbbab7c2cfe130df017a3b518d176/nugraph/models/nugraph3/NuGraph3.py#L260)
and
[https://github.com/nugraph/nugraph/blob/9ffb6ccac82fbbab7c2cfe130df017a3b518d176/scripts/train.py#L18](https://github.com/nugraph/nugraph/blob/9ffb6ccac82fbbab7c2cfe130df017a3b518d176/scripts/train.py#L18)
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