Owner
deepmodeling
30 indexed repositories · View on GitHub
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deepmd-kit
A deep learning package for many-body potential energy representation and molecular dynamics
Python · 2037 stars
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Uni-Mol
Official Repository for the Uni-Mol Series Methods
Python · 1160 stars
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jax-fem
Differentiable Finite Element Method with JAX
Python · 754 stars
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dpgen
The deep potential generator to generate a deep-learning based model of interatomic potential energy and force field
Python · 399 stars
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dpdata
A Python package for manipulating atomistic data of software in computational science
Python · 254 stars
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DMFF
DMFF (Differentiable Molecular Force Field) is a Jax-based python package that provides a full differentiable implementation of molecular...
Python · 198 stars
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Uni-Lab-OS
A Platform for Laboratory Automation.
Python · 177 stars
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CrystalFormer
A Foundation Model for Crystal Structure Generation and Prediction
Jupyter Notebook · 152 stars
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152 stars
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DeePTB
DeePTB: A deep learning package for tight-binding Hamiltonian with ab initio accuracy.
Python · 122 stars
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deepks-kit
a package for developing machine learning-based chemically accurate energy and density functional models
Python · 120 stars
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reacnetgenerator
an automatic reaction network generator for reactive molecular dynamics simulation
Python · 103 stars
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SciAssess
SciAssess is a comprehensive benchmark for evaluating Large Language Models' proficiency in scientific literature analysis across various...
Python · 89 stars
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AI4S-agent-tools
Collecting a variety of Agent-Ready tool modules
Python · 89 stars
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dpdispatcher
generate HPC scheduler systems jobs input scripts and submit these scripts to HPC systems and poke until they finish
Python · 62 stars
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deepmd-gnn
DeePMD-kit plugin for various graph neural network models
Python · 56 stars
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rid-kit
Reinforced dynamics
Python · 52 stars
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dpti
A Python Package to Automate Thermodynamic Integration Calculations for Free Energy
Python · 42 stars
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build-your-agent
An open project initiated by the DeepModeling community focused on constructing intelligent agents for scientific research. It is committ...
TypeScript · 38 stars
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unimol_tools
unimol_tools: a easy-use & auto-ml molecule property prediction tool
Python · 34 stars
- 10 more repositories live on View on GitHub
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deepmodeling/Uni-Mol#186 · 3 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#187 · 6 comments · 0 reactions · 0 assignees ·
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code problem Open
deepmodeling/Uni-Mol#188 · 2 comments · 0 reactions · 0 assignees ·
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无法使用scaffold数据划分方式 Open
deepmodeling/Uni-Mol#192 · 1 comment · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#199 · 10 comments · 0 reactions · 0 assignees ·
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uni_mol_tools weight Open
deepmodeling/Uni-Mol#207 · 1 comment · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#208 · 1 comment · 0 reactions · 0 assignees ·
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Correting patoms Open
deepmodeling/Uni-Mol#210 · 1 comment · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#212 · 1 comment · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#213 · 1 comment · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#216 · 1 comment · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#220 · 4 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#225 · 4 comments · 0 reactions · 0 assignees ·
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内存泄漏 Open
deepmodeling/Uni-Mol#227 · 7 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#234 · 9 comments · 0 reactions · 0 assignees ·
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您好,请问可以提供原始口袋的pdb文件吗 Open
deepmodeling/Uni-Mol#235 · 3 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#242 · 9 comments · 0 reactions · 0 assignees ·
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docking.py error Open
deepmodeling/Uni-Mol#248 · 3 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#255 · 9 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#256 · 3 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#259 · 1 comment · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#261 · 5 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#262 · 3 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#269 · 8 comments · 0 reactions · 0 assignees ·
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deepmodeling/Uni-Mol#270 · 1 comment · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#3470 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#3491 · 1 comment · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#3493 · 0 comments · 0 reactions · 2 assignees ·
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enhancement
deepmodeling/deepmd-kit#3505 · 1 comment · 0 reactions · 1 assignee ·
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enhancement
deepmodeling/deepmd-kit#3512 · 0 comments · 0 reactions · 0 assignees ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3524 · 1 comment · 0 reactions · 1 assignee ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3530 · 0 comments · 0 reactions · 1 assignee ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3531 · 0 comments · 0 reactions · 1 assignee ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3537 · 0 comments · 0 reactions · 1 assignee ·
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branch: master todo comment type: todo wontfix
deepmodeling/deepmd-kit#3538 · 2 comments · 0 reactions · 1 assignee ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3539 · 0 comments · 0 reactions · 0 assignees ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3552 · 1 comment · 0 reactions · 1 assignee ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3559 · 0 comments · 0 reactions · 1 assignee ·
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branch: master todo comment type: todo
deepmodeling/deepmd-kit#3745 · 2 comments · 0 reactions · 1 assignee ·
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The unexpcted error: CUDA_ERROR_INVALID_DEVICE: invalid device ordinal from `dp compress` command. Openbug upstream
deepmodeling/deepmd-kit#3764 · 4 comments · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#3859 · 6 comments · 0 reactions · 1 assignee ·
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enhancement
deepmodeling/deepmd-kit#3869 · 0 comments · 0 reactions · 0 assignees ·
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enhancement upstream
deepmodeling/deepmd-kit#3932 · 9 comments · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#3939 · 2 comments · 0 reactions · 2 assignees ·
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bug
deepmodeling/deepmd-kit#3949 · 8 comments · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#3951 · 3 comments · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#4078 · 2 comments · 0 reactions · 0 assignees ·
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bug
deepmodeling/deepmd-kit#4171 · 10 comments · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#4181 · 0 comments · 0 reactions · 0 assignees ·
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enhancement
deepmodeling/deepmd-kit#4201 · 1 comment · 0 reactions · 0 assignees ·
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