deepmodeling / deepmodeling/dpti
Solving the Gibbs free energy of liquid water through thermodynamic integration
- Dominant language
- Python
- Stars
- 42
- Forks
- 27
- PR merge metrics
- No merged PRs in 30d
Description
Dear Developers,
Here are two questions on Gibbs free energy of liquid water based on the paper (Phase Diagram of a Deep Potential Water Model).
Firstly, I noticed that a cell containing 256 water molecules was used to calculate the Gibbs free energy of liquid water. Could you please clarify whether this box was created as a new cubic water box or if it was a supercell of your training set (128 water molecules) followed by an NPT-iso simulation?
Secondly, regarding the calculation of entropy in the free energy, I am curious how to calculate it by the thermodynamic integration. Additionally, I have observed that the DPTI module contains information related to the calculation of ice phase boundaries (https://www.yuque.com/dpti/manual/gkrez8). I am wondering if there are some examples for calculating the liquid models.
Thank you for your time and assistance.
Contributor guide
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Research direction
Start with the linked DPTI manual section on ice phase-boundary calculations and compare it with the thermodynamic-integration workflow described in the issue and cited paper. Check the repository for existing liquid-water examples or documentation entry points; done would be a documented, reproducible liquid-water example or a clarified explanation of the requested calculation.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100