deepmodeling / deepmodeling/dpti

Solving the Gibbs free energy of liquid water through thermodynamic integration

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Description

Dear Developers,

Here are two questions on Gibbs free energy of liquid water based on the paper (Phase Diagram of a Deep Potential Water Model).

Firstly, I noticed that a cell containing 256 water molecules was used to calculate the Gibbs free energy of liquid water. Could you please clarify whether this box was created as a new cubic water box or if it was a supercell of your training set (128 water molecules) followed by an NPT-iso simulation?

Secondly, regarding the calculation of entropy in the free energy, I am curious how to calculate it by the thermodynamic integration. Additionally, I have observed that the DPTI module contains information related to the calculation of ice phase boundaries (https://www.yuque.com/dpti/manual/gkrez8). I am wondering if there are some examples for calculating the liquid models.

Thank you for your time and assistance.

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Research direction

Start with the linked DPTI manual section on ice phase-boundary calculations and compare it with the thermodynamic-integration workflow described in the issue and cited paper. Check the repository for existing liquid-water examples or documentation entry points; done would be a documented, reproducible liquid-water example or a clarified explanation of the requested calculation.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
documentation
Issue type
Documentation
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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