deepgenomics / deepgenomics/GenomeKit

more flexible annotation features

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Python
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Description

One of the issues I'm noticing is that since GK is structured around what features are exposed from annotations (eg, UTRs had to be added manually as a table), it limits general querying of stuff.

If possible, it would be nice if a user could specify which features to parse and build into tables to query. One of the issues with this is that GK fixes up missing/broken hierarchical information (gene->transcript->exon|intron) where as a general one won't.

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