Cellular Modeling Support
- Dominant language
- Python
- Stars
- 7k
- Forks
- 2.3k
- PR merge metrics
- No merged PRs in 30d
Description
There's been a lot of interesting progress recently in cellular modeling. In particular, I'm thinking of this paper that creates a deep learned cell simulator:
https://www.nature.com/articles/nmeth.4627
The code for the simulator is open sources as well:
https://github.com/idekerlab/DCell
I wonder if there's a way to support this form of modeling work through DeepChem. I suspect this would be a very nice complement to deep microscopy support.
Contributor guide
Research direction
The issue links the Nature paper and the open-source DCell repository, and mentions DeepChem's deep microscopy support as related work. Start by reviewing those references and the existing deep microscopy support; the issue is complete only after a concrete, agreed scope for cellular-modeling support and its validation is defined.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, machine-learning
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100