deepchem / deepchem/DeepLearningLifeSciences
Chapter 5 Error pdbbind_rf
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Description
I am getting the following error from pdbbind_rf:
`ValueError: Found array with 0 feature(s) (shape=(3881, 0)) while a minimum of 1 is required.`
the first of the traceback is from
`model.fit(train_dataset)`
deepchem version = 2.4.0
tensorflow version = 2.3.0
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Research direction
Start with the Chapter 5 pdbbind_rf example and reproduce the failure at model.fit(train_dataset) using DeepChem 2.4.0 and TensorFlow 2.3.0. Trace how train_dataset is created and determine why it has shape (3881, 0); done means establishing a reproducible correction or documenting the required setup so fitting receives features.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- jupyter-notebook, tensorflow
- Domain
- machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100