Update old Packages and fix some vulnerabilities!

I've current try to port `deco` to windows.

By installing some depencies, i've found some problems. Different packages are **outdated** and another has **critical vulnerabilities**!

**Outdated Packages**

Package Current Wanted Latest Location
nodobjc MISSING 2.1.0 2.1.0 DecoIDE-Desktop
npm MISSING git git DecoIDE-Desktop
electron-prebuilt 1.4.3 1.4.13 1.4.13 DecoIDE-Desktop
file-tree-server-transport-electron 0.0.1 0.0.1 0.0.4 DecoIDE-Desktop
fs-extra 0.30.0 0.30.0 6.0.1 DecoIDE-Desktop
fs-plus 2.10.1 2.10.1 3.0.2 DecoIDE-Desktop
git-utils 4.1.4 4.1.4 5.4.0 DecoIDE-Desktop
jscodeshift 0.3.32 0.3.32 0.5.1 DecoIDE-Desktop
jsonfile 2.4.0 2.4.0 4.0.0 DecoIDE-Desktop
raven 0.10.0 0.10.0 2.6.3 DecoIDE-Desktop
sane 1.7.0 1.7.0 2.5.2 DecoIDE-Desktop
winston 2.4.3 2.4.3 3.0.0 DecoIDE-Desktop

**Security**

found 12 vulnerabilities (10 low, 2 high)
run `npm audit fix` to fix them, or `npm audit` for details