dchaley / dchaley/qupath-project-initializer
Import GeoJSON files
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- Kotlin
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Description
To support images > 2B pixels, we need to import GeoJSON files for the detected segments rather than trying to parse the segmentation masks. ImageJ does not support segmentation masks aka source images with more than 2B pixels (signed int32).
In the GUI, importing GeoJSON is drag-and-drop. In code, it seems to be relatively straightforward:
https://forum.image.sc/t/adding-objects-to-qupath-from-geojson-file-with-featurecollections/87900/2
Segmentation side of this:
https://github.com/dchaley/deepcell-segmentation/issues/386
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