dchaley / dchaley/deepcell-segmentation
Split compartment postprocessing into separate tasks
Open
- Dominant language
- Jupyter Notebook
- Stars
- 9
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
The prediction model always generates both compartments, and puts them into a single file (2 pairs of predictions, 4 arrays total). Then, postprocessing on each is independent.
Instead of saving to a shared raw predictions file, and later to a shared predictions file, we should separate everything into the compartment. For example,
raw-predictions-whole-cell.npz
predictions-whole-cell-mask.npz
predictions-whole-cell-shapes.json
This would let computation happen in parallel, and also reduce memory requirements by ~2x pixel size.
Contributor guide
No contributing guide indexed for this repository
Assessment
This issue has not been assessed yet.