datacamp / datacamp/rdocumentation-2.0

[bug] FindMyFriends documentation outdate

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Description

The documentation on how to install the package is outdated. It should be update as follows.

Documentation entry
GitHub README

Observed behavior

FindMyFriends is an R package for doing pangenomic analyses on microbial genomes. It is released as part of the Bioconductor project and can be installed with the biocLite() function:

source("https://bioconductor.org/biocLite.R")
biocLite("FindMyFriends")

Expected behavior

FindMyFriends is an R package for doing pangenomic analyses on microbial genomes. It is released as part of the Bioconductor project and can be installed with the BiocManager::install() function:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")
BiocManager::install("FindMyFriends")

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by comparing the Documentation entry with the GitHub README and locate the installation instructions for FindMyFriends. Replace the outdated biocLite() example with the BiocManager::install() instructions shown in the issue, then verify that the rendered documentation presents the current installation steps.

Written by the indexing model from the issue text.

Assessment

Tech stack
r
Domain
documentation
Issue type
Documentation
Difficulty
1/5
Estimated time
Under an hour
Activity status
Stale
Clarity
Clearly specified
Newbie friendliness
72/100

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