daisybio / daisybio/drevalpy

LPO: only seen cell lines & drugs

Open
#199 0 comments 0 reactions 0 assignees View on GitHub
enhancement
Dominant language
Python
Stars
44
Forks
12
Avg merge
7d 19h
Merged PRs (30d)
10

Description

Right now, LPO just splits randomly. How about we enforce that in each training split, every cell line and every drug occur so that we really optimize for missing value imputation. Because currently, it could happen by chance that we have an unseen drug/cell line in the validation or test dataset.

Then we could also enforce for cross-study prediction that we only predict seen cell lines/drugs.

Contributor guide

Open the contributing guide

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.