cytomining / cytomining/profiling-recipe

Create correlation histograms routinely as part of the recipe

Open
#29 0 comments 0 reactions 0 assignees View on GitHub
enhancement
Dominant language
Python
Stars
11
Forks
34
PR merge metrics
No merged PRs in 30d

Description

We are already calculating an all vs all correlation heatmap as part of the QC steps; generating the replicate wells vs non replicate wells "percent replicating" histogram would be awesome as we essentially always need it.

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by locating the recipe's QC steps and the existing all-versus-all correlation heatmap generation. Trace how replicate and non-replicate wells are identified and how percent replicating is calculated; done means the corresponding histogram is generated routinely alongside the heatmap.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data-visualization
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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