cytomining / cytomining/profiling-recipe
Include consensus building as a recipe step
- Dominant language
- Python
- Stars
- 11
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
In the same way that aggregation is currently missing from the pipeline (#9 ) forming consensus profiles should also be added.
To keep the pipeline consistent, we should also enable `pycytominer.consensus.py` to work with input files (aka cytomining/pycytominer#107 should be merged first)
Contributor guide
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Research direction
Start by reviewing the existing aggregation recipe step referenced by issue #9, then inspect how consensus profiles are handled in pycytominer/consensus.py. Confirm that cytomining/pycytominer#107 is merged first and determine how input files should flow through the recipe. Done means consensus building is exposed as a consistent pipeline step and works with input files.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data-engineering
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100