cytomining / cytomining/DeepProfiler

Old / unwanted commands?

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#316 2 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
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Description

Running `python3 deepprofiler` yields

```
Options:
--root PATH Root directory for DeepProfiler experiment
--config TEXT Path to existing config file
--cores INTEGER Number of CPU cores for parallel processing (all=0)
--gpu TEXT GPU device id
--exp TEXT Name of experiment
--single-cells TEXT Name of single cell export folder
--metadata TEXT Name of metadata file, default index.csv
--logging TEXT Path to file with comet.ml API key
--help Show this message and exit.

Commands:
download-bbbc021
export-sc
prepare
profile
setup
split
train
traintf2
```

Its not a big problem, but the first and last commands are outdated or maybe they do have a reason to be there, that I dont know of

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