cytomining / cytomining/DeepProfiler
Build helper functions
- Dominant language
- Python
- Stars
- 129
- Forks
- 52
- Avg merge
- 5h 20m
- Merged PRs (30d)
- 2
Description
Working with millions of files can be a real problem and lead to a lot (!!!) of lost time. Implementing these helper functions will make sure that one can run the big functions (profile, sample-sc, and train) without any errors that cost days of work.
Here is a list of suggestions for the most helpful test functions:
1. **check images**:
This function simply runs over all lines in the index and checks if the images exist. This prevents the profile command form exiting with an error.
2. **Check sc-metadata.csv**
This function should run over the sc-metadata file and check if all images exist in the right place. This needs to be run prior to training to prevent crashes during training.
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