cytomining / cytomining/CytoTable
Extract or somehow store data from CellProfiler `experiment` tables in CytoTable output
- Dominant language
- Python
- Stars
- 21
- Forks
- 6
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 6
Description
This issue comes from a question @jenna-tomkinson raised about whether CytoTable can store `experiment` table data somehow. CytoTable doesn't currently include this data in output. Minor note: some testing datasets don't appear to store this data, so it would need to be a possibly optional inclusion (allowing for processing without breaking when implemented).
Contributor guide
Research direction
Start by tracing how CytoTable reads CellProfiler outputs and builds its output data, then investigate how experiment tables are represented in available datasets. Define optional handling for datasets that lack this data. Done means experiment data is included when present without breaking processing when it is absent.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100