cytomining / cytomining/CytoTable
Account for CellProfiler data schema differences across versions
- Dominant language
- Python
- Stars
- 21
- Forks
- 6
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 6
Description
CellProfiler has various releases which may include slightly different output and as a result entail different treatment within pycytominer-transform. Closing this issue may entail addressing the following:
- [ ] Specify which CellProfiler versions are supported
- [ ] Implement pycytominer-transform design for CellProfiler version specification
- [ ] Implement isolated testing for CellProfiler versions with pcytominer-transform output
Contributor guide
Research direction
No files or tests are named. Start by identifying where pycytominer-transform output handling and CellProfiler schema assumptions are defined, then review the supported-version requirements. Done means supported CellProfiler versions are specified, version handling is designed and implemented, and isolated tests cover each version's output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Quiet
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100