cytomining / cytomining/CytoTable
Integrate IN Carta data ouput as input for CytoTable
- Dominant language
- Python
- Stars
- 21
- Forks
- 6
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 6
Description
[IN Carta](https://www.moleculardevices.com/products/cellular-imaging-systems/acquisition-and-analysis-software/in-carta-image-analysis-software) provides single-cell data output as (at least) CSV's. These files have a different format than that of CellProfiler output. This issue highlights a need to integrate the data output from IN Carta as an input to CytoTable.
Possible steps involved:
- [x] Gather sample or synthetic IN Carta data
- [x] Add test for IN Carta data
- [x] Update documentation surrounding integration
- [ ] Validate compartment and metadata preset input settings for IN Carta preset (and elsewhere) (relates to [#145 comment](https://github.com/cytomining/CytoTable/pull/145#discussion_r1453884564))
- [x] Create new release with this feature enabled
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Assessment
This issue has not been assessed yet.