cytomining / cytomining/CytoTable

Integrate IN Carta data ouput as input for CytoTable

Open
#136 1 comment 0 reactions 1 assignee Claimed by @d33bs View on GitHub
enhancement
Dominant language
Python
Stars
21
Forks
6
Avg merge
2d 3h
Merged PRs (30d)
6

Description

[IN Carta](https://www.moleculardevices.com/products/cellular-imaging-systems/acquisition-and-analysis-software/in-carta-image-analysis-software) provides single-cell data output as (at least) CSV's. These files have a different format than that of CellProfiler output. This issue highlights a need to integrate the data output from IN Carta as an input to CytoTable.

Possible steps involved:

- [x] Gather sample or synthetic IN Carta data
- [x] Add test for IN Carta data
- [x] Update documentation surrounding integration
- [ ] Validate compartment and metadata preset input settings for IN Carta preset (and elsewhere) (relates to [#145 comment](https://github.com/cytomining/CytoTable/pull/145#discussion_r1453884564))
- [x] Create new release with this feature enabled

Contributor guide

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Assessment

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