cytomining / cytomining/CytoDataFrame
Add capability to read images from valid S3 paths
Open
enhancement
- Dominant language
- Python
- Stars
- 13
- Forks
- 2
- Avg merge
- 1d 16h
- Merged PRs (30d)
- 3
Description
JUMP images are stored within S3. We could use object paths per record / object and dynamically read from S3. Work coincides with efforts found within https://github.com/WayScience/JUMP-single-cell/blob/main/0.download_data/2.download_images.ipynb
Contributor guide
Research direction
Start with the linked JUMP-single-cell notebook, 0.download_data/2.download_images.ipynb, to understand the valid S3 object paths and per-record image usage. Then locate the corresponding image-loading entry point in CytoDataFrame; done means images can be read dynamically from those S3 paths.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- aws, python
- Domain
- cloud, data
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100