NYC instrumentation report contains instrumented files

**Logs and screenshots**

**Versions**

- What is this plugin's version? If this is NOT the latest [released version](https://github.com/cypress-io/code-coverage/releases), can you try the latest version, please? 17
- What is the Cypress version?
- What is your operating system? macOS
- What is the shell?
- What is the Node version? 16.16
- What is the NPM version? 8.11
- How do you instrument your application? Cypress [does not instrument web application code](https://github.com/cypress-io/code-coverage#instrument-your-application), so you must do it yourself.
Application has been instrumented via `nyc instrument --in-place` command, then built and served via `http-server`

- When running tests, if you open the web application in a regular browser and open DevTools, do you see `window.__coverage__` object? Can you paste a screenshot?
-
Yes, `window.coverage` object is visible and reporter contains files.

- Is there a `.nyc_output` folder? Is there a `.nyc_output/out.json` file? Is it empty? Can you paste at least part of it so we can see the keys and file paths?

yes, `out.json` as well as report is visible and contains data. Part of it visible on screenshot above.

- Do you have any custom NYC settings in `package.json` (`nyc` object) or in other [NYC config files](https://github.com/istanbuljs/nyc#configuration-files)?
- Do you run Cypress tests in a Docker container?
no
**Describe the bug**
After running tests, nyc instrumentation report contains files that are still instrumented, not "reverting" them back to raw state.