Pangenotype matrix: end-to-end GWAS regression demo
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- Dominant language
- Rust
- Stars
- 45
- Forks
- 3
- PR merge metrics
- No merged PRs in 30d
Description
Starting with the current matrix.py demo from #238, let's add on NumPy-based regression to perform a sort of minimal GWAS experiment. This will probably need to happen after #245 to avoid a bunch of churn.
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with flatgfa-py/examples/matrix.py, the current demo referenced from #238, and review #245 before making plans because this work is expected to follow it. Trace how the matrix demo runs, then determine the scope needed for a NumPy-based regression and a minimal end-to-end GWAS experiment; done should be a runnable regression demo.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- numpy, python
- Domain
- bioinformatics, data
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100