BUG UTILS FASTA export assemble
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bug
- Dominant language
- Python
- Stars
- 0
- Forks
- 0
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Description
rewrite export_assembly.py
BUGS:
- Only one contig in each scaffold
- Spacers are not included
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading export_assembly.py and trace how scaffolds, contigs, and spacers are represented in the FASTA export. Reproduce the reported cases with available HiCT data, then verify that each scaffold includes all of its contigs and that spacers are present in the exported sequences.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- data
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100