Removing files from the index after updating asset indexes may fail silently

Description

If you have a large number of removed assets and go to update the asset indexes, attempting to remove missing folders and files from the index can fail however the UI shows it as being successful.

From the error log on request to admin/actions/utilities/asset-index-perform-action:

yii\base\ErrorException: Unknown: Input variables exceeded 1000. To increase the limit change max_input_vars in php.ini.
#2 /app/vendor/yiisoft/yii2/base/ErrorException.php(43): require
#1 /app/vendor/craftcms/cms/bootstrap/web.php(51): require
#0 index.php(20): null

Steps to reproduce

Something like this I imagine:

1. Create an S3 volume where the bucket has 1000 assets and sync it up. (When we ran into this we had 799 files to be deleted)
2. Change the S3 bucket to one that doesn't have any files.
3. Go to Utilities -> Asset Indexes, click Update Asset Indexes then choose to remove all. A tick will be shown but the above error appears in the log.

Additional info

• Craft version: 3.5.15.1
• PHP version: 7.4
• Database driver & version: MySQL
• Plugins & versions: AWS S3 1.2.11