Multi-conditions and multi-batches
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Description
Hi,
Thanks for this interesting package!
I am trying to analyse scRNA-seq data of ~20 samples, each sample from one of 4 conditions and one of 4 batches. I want to find the differential gene expression between every two conditions on the premise of correcting the batch effect. Is that correct to fit the model by `fit <- lemur(sce, design = ~ batch + condition)` and test effect of any two conditions by `fit <- test_de(fit, contrast = cond(condition= "condition2") - cond(condition= "condition4"))`? Many thanks for any help!
Best,
xinyun
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