conda-forge / conda-forge/julia-feedstock

missing cert.pem blocks MbedTLS and IJulia from installing, manual download fixes the issue

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Description

### Solution to issue cannot be found in the documentation.

- [X] I checked the documentation.

### Issue

Installing julia with conda/mamba and trying to install IJulia using Pkg.jl leads to a bunch of errors, with the important part being:

```
ERROR: LoadError: InitError: SystemError: opening file "/home/jena/mambaforge/envs/julia/share/julia/cert.pem": Adresář nebo soubor neexistuje
```

(last part: `Directory or file does not exist`)

Somewhere on Julia Discourse I've read a suggestion (cannot find it now) to download Julia source from the website, unpack the cert.pam into the folder where it's missing and try again. I just did that now and it fixed the problem and I was able to start Jupyter notebook.

### Installed packages

```shell
# packages in environment at /home/jena/mambaforge/envs/julia:
#
# Name Version Build Channel
_libgcc_mutex 0.1 conda_forge conda-forge
_openmp_mutex 4.5 2_gnu conda-forge
anyio 4.4.0 pyhd8ed1ab_0 conda-forge
argon2-cffi 23.1.0 pyhd8ed1ab_0 conda-forge
argon2-cffi-bindings 21.2.0 py311h459d7ec_4 conda-forge
arpack 3.9.1 nompi_h77f6705_101 conda-forge
arrow 1.3.0 pyhd8ed1ab_0 conda-forge
asttokens 2.4.1 pyhd8ed1ab_0 conda-forge
async-lru 2.0.4 pyhd8ed1ab_0 conda-forge
attrs 24.2.0 pyh71513ae_0 conda-forge
babel 2.14.0 pyhd8ed1ab_0 conda-forge
beautifulsoup4 4.12.3 pyha770c72_0 conda-forge
bleach 6.1.0 pyhd8ed1ab_0 conda-forge
brotli-python 1.1.0 py311hb755f60_1 conda-forge
bzip2 1.0.8 h7f98852_4 conda-forge
c-ares 1.24.0 hd590300_0 conda-forge
ca-certificates 2024.7.4 hbcca054_0 conda-forge
cached-property 1.5.2 hd8ed1ab_1 conda-forge
cached_property 1.5.2 pyha770c72_1 conda-forge
certifi 2024.7.4 pyhd8ed1ab_0 conda-forge
cffi 1.17.0 py311ha8e6434_0 conda-forge
charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge
comm 0.2.2 pyhd8ed1ab_0 conda-forge
curl 8.9.1 h18eb788_0 conda-forge
debugpy 1.8.5 py311hf86e51f_0 conda-forge
decorator 5.1.1 pyhd8ed1ab_0 conda-forge
defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge
entrypoints 0.4 pyhd8ed1ab_0 conda-forge
exceptiongroup 1.2.2 pyhd8ed1ab_0 conda-forge
executing 2.0.1 pyhd8ed1ab_0 conda-forge
fqdn 1.5.1 pyhd8ed1ab_0 conda-forge
gettext 0.21.1 h27087fc_0 conda-forge
git 2.46.0 pl5321hb5640b7_0 conda-forge
gmp 6.3.0 h59595ed_0 conda-forge
h11 0.14.0 pyhd8ed1ab_0 conda-forge
h2 4.1.0 pyhd8ed1ab_0 conda-forge
hpack 4.0.0 pyh9f0ad1d_0 conda-forge
httpcore 1.0.5 pyhd8ed1ab_0 conda-forge
httpx 0.27.0 pyhd8ed1ab_0 conda-forge
hyperframe 6.0.1 pyhd8ed1ab_0 conda-forge
icu 75.1 he02047a_0 conda-forge
idna 3.7 pyhd8ed1ab_0 conda-forge
importlib-metadata 8.2.0 pyha770c72_0 conda-forge
importlib_metadata 8.2.0 hd8ed1ab_0 conda-forge
importlib_resources 6.4.3 pyhd8ed1ab_0 conda-forge
ipykernel 6.29.5 pyh3099207_0 conda-forge
ipython 8.26.0 pyh707e725_0 conda-forge
ipywidgets 8.1.3 pyhd8ed1ab_0 conda-forge
isoduration 20.11.0 pyhd8ed1ab_0 conda-forge
jedi 0.19.1 pyhd8ed1ab_0 conda-forge
jinja2 3.1.4 pyhd8ed1ab_0 conda-forge
json5 0.9.25 pyhd8ed1ab_0 conda-forge
jsonpointer 3.0.0 py311h38be061_0 conda-forge
jsonschema 4.23.0 pyhd8ed1ab_0 conda-forge
jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge
jsonschema-with-format-nongpl 4.23.0 hd8ed1ab_0 conda-forge
julia 1.10.4 hf18f99d_1 conda-forge
jupyter 1.0.0 pyhd8ed1ab_10 conda-forge
jupyter-lsp 2.2.5 pyhd8ed1ab_0 conda-forge
jupyter_client 8.6.2 pyhd8ed1ab_0 conda-forge
jupyter_console 6.6.3 pyhd8ed1ab_0 conda-forge
jupyter_core 5.7.2 py311h38be061_0 conda-forge
jupyter_events 0.10.0 pyhd8ed1ab_0 conda-forge
jupyter_server 2.14.2 pyhd8ed1ab_0 conda-forge
jupyter_server_terminals 0.5.3 pyhd8ed1ab_0 conda-forge
jupyterlab 4.2.4 pyhd8ed1ab_0 conda-forge
jupyterlab_pygments 0.3.0 pyhd8ed1ab_1 conda-forge
jupyterlab_server 2.27.3 pyhd8ed1ab_0 conda-forge
jupyterlab_widgets 3.0.11 pyhd8ed1ab_0 conda-forge
keyutils 1.6.1 h166bdaf_0 conda-forge
krb5 1.21.3 h659f571_0 conda-forge
ld_impl_linux-64 2.40 hf3520f5_7 conda-forge
libblas 3.9.0 16_linux64_openblas conda-forge
libcblas 3.9.0 16_linux64_openblas conda-forge
libcurl 8.9.1 hdb1bdb2_0 conda-forge
libedit 3.1.20191231 he28a2e2_2 conda-forge
libev 4.33 h516909a_1 conda-forge
libexpat 2.6.2 h59595ed_0 conda-forge
libffi 3.4.2 h7f98852_5 conda-forge
libgcc-ng 12.2.0 h65d4601_19 conda-forge
libgfortran-ng 13.2.0 h69a702a_0 conda-forge
libgfortran5 13.2.0 ha4646dd_0 conda-forge
libgit2 1.8.1 he8d1d4c_1 conda-forge
libgomp 12.2.0 h65d4601_19 conda-forge
libhwloc 2.11.1 default_hecaa2ac_1000 conda-forge
libiconv 1.17 h166bdaf_0 conda-forge
liblapack 3.9.0 16_linux64_openblas conda-forge
libnghttp2 1.58.0 h47da74e_1 conda-forge
libnsl 2.0.0 h7f98852_0 conda-forge
libopenblas 0.3.21 pthreads_h78a6416_3 conda-forge
libopenblas-ilp64 0.3.23 pthreads_h5c82d6a_0 conda-forge
libopenlibm4 0.8.1 hd590300_1 conda-forge
libsodium 1.0.18 h36c2ea0_1 conda-forge
libsqlite 3.46.0 hde9e2c9_0 conda-forge
libssh2 1.11.0 h0841786_0 conda-forge
libstdcxx-ng 12.2.0 h46fd767_19 conda-forge
libunwind 1.6.2 h9c3ff4c_0 conda-forge
libutf8proc 2.8.0 h166bdaf_0 conda-forge
libuuid 2.38.1 h0b41bf4_0 conda-forge
libxml2 2.12.7 he7c6b58_4 conda-forge
libzlib 1.3.1 h4ab18f5_1 conda-forge
markupsafe 2.1.5 py311h459d7ec_0 conda-forge
matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge
mbedtls 3.3.0 hcb278e6_0 conda-forge
metis 5.1.0 h58526e2_1006 conda-forge
mistune 3.0.2 pyhd8ed1ab_0 conda-forge
mpfr 4.2.1 h9458935_0 conda-forge
nbclient 0.10.0 pyhd8ed1ab_0 conda-forge
nbconvert 7.16.4 hd8ed1ab_1 conda-forge
nbconvert-core 7.16.4 pyhd8ed1ab_1 conda-forge
nbconvert-pandoc 7.16.4 hd8ed1ab_1 conda-forge
nbformat 5.10.4 pyhd8ed1ab_0 conda-forge
ncurses 6.3 h27087fc_1 conda-forge
nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge
notebook 7.2.1 pyhd8ed1ab_0 conda-forge
notebook-shim 0.2.4 pyhd8ed1ab_0 conda-forge
openblas-ilp64 0.3.23 pthreads_h3d04fff_0 conda-forge
openlibm 0.8.1 h7f98852_0 conda-forge
openssl 3.3.1 h4bc722e_2 conda-forge
overrides 7.7.0 pyhd8ed1ab_0 conda-forge
p7zip 16.02 h9c3ff4c_1001 conda-forge
packaging 24.1 pyhd8ed1ab_0 conda-forge
pandoc 3.3 ha770c72_0 conda-forge
pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge
parso 0.8.4 pyhd8ed1ab_0 conda-forge
pcre2 10.44 hba22ea6_2 conda-forge
perl 5.32.1 2_h7f98852_perl5 conda-forge
pexpect 4.9.0 pyhd8ed1ab_0 conda-forge
pickleshare 0.7.5 py_1003 conda-forge
pip 24.2 pyhd8ed1ab_0 conda-forge
pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge
platformdirs 4.2.2 pyhd8ed1ab_0 conda-forge
prometheus_client 0.20.0 pyhd8ed1ab_0 conda-forge
prompt-toolkit 3.0.47 pyha770c72_0 conda-forge
prompt_toolkit 3.0.47 hd8ed1ab_0 conda-forge
psutil 6.0.0 py311h331c9d8_0 conda-forge
ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge
pure_eval 0.2.3 pyhd8ed1ab_0 conda-forge
pycparser 2.22 pyhd8ed1ab_0 conda-forge
pygments 2.18.0 pyhd8ed1ab_0 conda-forge
pysocks 1.7.1 pyha2e5f31_6 conda-forge
python 3.11.3 h2755cc3_0_cpython conda-forge
python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge
python-fastjsonschema 2.20.0 pyhd8ed1ab_0 conda-forge
python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge
python_abi 3.11 5_cp311 conda-forge
pytz 2024.1 pyhd8ed1ab_0 conda-forge
pyyaml 6.0.2 py311h61187de_0 conda-forge
pyzmq 26.1.0 py311h759c1eb_0 conda-forge
qtconsole-base 5.5.2 pyha770c72_0 conda-forge
qtpy 2.4.1 pyhd8ed1ab_0 conda-forge
readline 8.2 h8228510_1 conda-forge
referencing 0.35.1 pyhd8ed1ab_0 conda-forge
requests 2.32.3 pyhd8ed1ab_0 conda-forge
rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge
rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge
rpds-py 0.20.0 py311hb3a8bbb_0 conda-forge
send2trash 1.8.3 pyh0d859eb_0 conda-forge
setuptools 72.1.0 pyhd8ed1ab_0 conda-forge
six 1.16.0 pyh6c4a22f_0 conda-forge
sniffio 1.3.1 pyhd8ed1ab_0 conda-forge
soupsieve 2.5 pyhd8ed1ab_1 conda-forge
stack_data 0.6.2 pyhd8ed1ab_0 conda-forge
suitesparse 7.8.1 h41f34aa_0 conda-forge
tbb 2021.12.0 h434a139_3 conda-forge
terminado 0.18.1 pyh0d859eb_0 conda-forge
tinycss2 1.3.0 pyhd8ed1ab_0 conda-forge
tk 8.6.13 noxft_h4845f30_101 conda-forge
tomli 2.0.1 pyhd8ed1ab_0 conda-forge
tornado 6.4.1 py311h331c9d8_0 conda-forge
traitlets 5.14.3 pyhd8ed1ab_0 conda-forge
types-python-dateutil 2.9.0.20240316 pyhd8ed1ab_0 conda-forge
typing-extensions 4.12.2 hd8ed1ab_0 conda-forge
typing_extensions 4.12.2 pyha770c72_0 conda-forge
typing_utils 0.1.0 pyhd8ed1ab_0 conda-forge
tzdata 2024a h0c530f3_0 conda-forge
uri-template 1.3.0 pyhd8ed1ab_0 conda-forge
urllib3 2.2.2 pyhd8ed1ab_1 conda-forge
wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge
webcolors 24.8.0 pyhd8ed1ab_0 conda-forge
webencodings 0.5.1 pyhd8ed1ab_2 conda-forge
websocket-client 1.8.0 pyhd8ed1ab_0 conda-forge
wheel 0.44.0 pyhd8ed1ab_0 conda-forge
widgetsnbextension 4.0.11 pyhd8ed1ab_0 conda-forge
xz 5.2.6 h166bdaf_0 conda-forge
yaml 0.2.5 h7f98852_2 conda-forge
zeromq 4.3.5 h75354e8_4 conda-forge
zipp 3.20.0 pyhd8ed1ab_0 conda-forge
zlib 1.3.1 h4ab18f5_1 conda-forge
zstandard 0.23.0 py311h5cd10c7_0 conda-forge
zstd 1.5.6 ha6fb4c9_0 conda-forge
```

### Environment info

```shell
active environment : julia
active env location : /home/jena/mambaforge/envs/julia
shell level : 2
user config file : /home/jena/.condarc
populated config files : /home/jena/mambaforge/.condarc
/home/jena/.condarc
conda version : 23.3.1
conda-build version : not installed
python version : 3.10.12.final.0
virtual packages : __archspec=1=x86_64
__glibc=2.35=0
__linux=6.8.0=0
__unix=0=0
base environment : /home/jena/mambaforge (writable)
conda av data dir : /home/jena/mambaforge/etc/conda
conda av metadata url : None
channel URLs : https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
package cache : /home/jena/mambaforge/pkgs
/home/jena/.conda/pkgs
envs directories : /home/jena/mambaforge/envs
/home/jena/.conda/envs
platform : linux-64
user-agent : conda/23.3.1 requests/2.31.0 CPython/3.10.12 Linux/6.8.0-40-generic elementary/7.1 glibc/2.35 solver/libmamba conda-libmamba-solver/23.3.0 libmambapy/1.4.2
UID:GID : 1000:1000
netrc file : None
offline mode : False
```

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