include pointer to fsl_deface
- Dominant language
- Shell
- Stars
- 45
- Forks
- 37
- PR merge metrics
- No merged PRs in 30d
Description
Just discovered that [FSL](https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSL) now also has a defacing tool which is based on the one from [UK Biobank](https://www.sciencedirect.com/science/article/pii/S1053811917308613). It's already included being called fsl_deface, however apparently not working properly (e.g., [see here](https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=FSL;4fea3c4.1903)). Once it has been tested and working properly, a pointer should be included in the [anonymization tools section of the docs](https://open-brain-consent.readthedocs.io/en/stable/anon_tools.html).
Contributor guide
Research direction
Start by checking whether FSL's fsl_deface works properly, using the linked FSL and UK Biobank references and the reported failure example. Once verified, update the anonymization tools section of the documentation with a pointer to fsl_deface and confirm the documentation reflects the tested tool.
Written by the indexing model from the issue text.
Assessment
- Domain
- documentation
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100