common-workflow-language / common-workflow-language/cwltool

Plan for dealing with conflicting filenames in the final output

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#925 0 comments 0 reactions 1 assignee Claimed by @psafont View on GitHub
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Python
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Description

1. determine final output locations
2. if duplicate locations for different files conflict with each other; or there is a conflict with an existing file then
a. do not rename the files
b. but put them in uniquely named subdirectories. Suggested: the output name, followed by "-1" or "-2" et cetera if needed.

Exception: For InplaceUpdate Files & Directories don't do any renaming

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