common-workflow-language / common-workflow-language/cwltool
cwltool missing python dep html5lib
- Dominant language
- Python
- Stars
- 376
- Forks
- 255
- Avg merge
- 2d 7h
- Merged PRs (30d)
- 12
Description
## Expected Behavior
All dependencies should be installed via pip
## Actual Behavior
Following docs [here](https://github.com/common-workflow-language/cwltool#install) to install just cwltool to virtual env results in the following warning when running `cwltool --validate my.cwl` (running under travis):
```
/home/travis/build/cancerit/dockstore-cgpmap/venv/lib/python3.4/site-packages/rdflib/plugins/parsers/structureddata.py:30: UserWarning: html5lib not found! RDFa and Microdata parsers will not be available.
```
Link to line in travis output [here](https://travis-ci.org/cancerit/dockstore-cgpmap/builds/346698962#L2756).
## Workflow Code
Not sure relevant but [here](https://github.com/cancerit/dockstore-cgpmap/blob/639ef8a22e7030ed61929884aafef930cf641910/Dockstore.cwl).
## Full Traceback
NA
## Your Environment
* cwltool version: 1.0.20180224135035
* Link to travis section: [here](https://travis-ci.org/cancerit/dockstore-cgpmap/builds/346698962#L2751-L2767)
Installed under virtualenv with [this travis config](https://github.com/cancerit/dockstore-cgpmap/blob/443a1a8579c51cb8981140bb865e99cfd8f8bcf3/.travis.yml).
Resolved via [this travis change](https://github.com/cancerit/dockstore-cgpmap/compare/443a1a8579c51cb8981140bb865e99cfd8f8bcf3...639ef8a22e7030ed61929884aafef930cf641910) for pip.
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